The tank is a drilled glass 60 gallon tank. (gift from the LFS and has a footprint of a 75gal) It will be housing my four Histrionica and either a group of Striata, or Kubotai (Yasuhikotakia Sidthimunki was an option, but my LFS if out for the first time this year.

Since it is already drilled, I decided to hook it up to an external filter. I am tossing around the idea of using a wet-dry setup, but I read that can dangerously increase the nitrates in a tank. I'm only going to have slow-growing plants (anubias & java fern) because my histrionica take great delight in destroying everything else, so there won't be much in the tank to eat up all of the nitrates.
That led me to consider adding a small aquaponics system.

I was very inspired by Vancmann's thread on his tank and wanted to give something like that a whirl (on a smaller scale). That way, I could have my plants, and not have the loaches eat them!
The question then is, should I go with a generic sump filter? Or try out the wet-dry set up? Which would be better with the terrestrial plants and why?
Also, I keep worrying about the plants releasing some toxin into the water. Am I being paranoid, or this a real possibility? What plants would be recommended for this kind of set up?