Approximately 3 days ago, I noticed small dark holes on my loach's stomach, near his fins...at first, they just looked like dark spots, but I knew from that point that something was wrong. I immediately separated him from my other fish and put him in a hospital tank I have. I asked some people at my local pet store what it could be and how I can treat it, and I got a bunch of answers, but nothing definite.
Earliar tonight, I noticed that the holes seem to have gotten bigger, and now he's sitting at the bottom of the tank, just not moving (he's always been a pretty active fish).

I took this picture last night. After shining a flashlight on the holes, I discovered that they go really deep into him...I almost think that they might be worms...
Please someone help me identify this and tell me how to treat it...I really like this loach and don't want to lose him.